The `oidcmp()` and `oideq()` functions only compare the prefix length as
specified by the given hash algorithm. This mandates that the object IDs
have a valid hash algorithm set, or otherwise we wouldn't be able to
figure out that prefix. As we do not have a hash algorithm in many
cases, for example when handling null object IDs, this assumption cannot
always be fulfilled. We thus have a fallback in place that instead uses
`the_repository` to derive the hash function. This implicit dependency
is hidden away from callers and can be quite surprising, especially in
contexts where there may be no repository.
In theory, we can adapt those functions to always memcmp(3P) the whole
length of their hash arrays. But there exist a couple of sites where we
populate `struct object_id`s such that only the prefix of its hash that
is actually used by the hash algorithm is populated. The remaining bytes
are left uninitialized. The fact that those bytes are uninitialized also
leads to warnings under Valgrind in some places where we copy those
bytes.
Refactor callsites where we populate object IDs to always initialize all
bytes. This also allows us to get rid of `oidcpy_with_padding()`, for
one because the input is now fully initialized, and because `oidcpy()`
will now always copy the whole hash array.
Signed-off-by: Patrick Steinhardt <ps@pks.im>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
alloc_nr, ALLOC_GROW, and ALLOC_GROW_BY are commonly used macros for
dynamic array allocation. Moving these macros to git-compat-util.h with
the other alloc macros focuses alloc.[ch] to allocation for Git objects
and additionally allows us to remove inclusions to alloc.h from files
that solely used the above macros.
Signed-off-by: Calvin Wan <calvinwan@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
We had several C files ignoring the rule to include one of the
appropriate headers first; fix that.
While at it, the rule in Documentation/CodingGuidelines about which
header to include has also fallen out of sync, so update the wording to
mention other allowed headers.
Unfortunately, C files in reftable/ don't actually follow the previous
or updated rule. If you follow the #include chain in its C files,
reftable/system.h _tends_ to be first (i.e. record.c first includes
record.h, which first includes basics.h, which first includees
system.h), but not always (e.g. publicbasics.c includes another header
first that does not include system.h). However, I'm going to punt on
making actual changes to the C files in reftable/ since I do not want to
risk bringing it out-of-sync with any version being used externally.
Signed-off-by: Elijah Newren <newren@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The flexible array member "k" of struct cb_node is used to store the key
of the crit-bit tree node. It offers no alignment guarantees -- in fact
the current struct layout puts it one byte after a 4-byte aligned
address, i.e. guaranteed to be misaligned.
oidtree uses a struct object_id as cb_node key. Since cf0983213c (hash:
add an algo member to struct object_id, 2021-04-26) it requires 4-byte
alignment. The mismatch is reported by UndefinedBehaviorSanitizer at
runtime like this:
hash.h:277:2: runtime error: member access within misaligned address 0x00015000802d for type 'struct object_id', which requires 4 byte alignment
0x00015000802d: note: pointer points here
00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00 00
^
SUMMARY: UndefinedBehaviorSanitizer: undefined-behavior hash.h:277:2 in
We can fix that by:
1. eliminating the alignment requirement of struct object_id,
2. providing the alignment in struct cb_node, or
3. avoiding the issue by only using memcpy to access "k".
Currently we only store one of two values in "algo" in struct object_id.
We could use a uint8_t for that instead and widen it only once we add
support for our twohundredth algorithm or so. That would not only avoid
alignment issues, but also reduce the memory requirements for each
instance of struct object_id by ca. 9%.
Supporting keys with alignment requirements might be useful to spread
the use of crit-bit trees. It can be achieved by using a wider type for
"k" (e.g. uintmax_t), using different types for the members "byte" and
"otherbits" (e.g. uint16_t or uint32_t for each), or by avoiding the use
of flexible arrays like khash.h does.
This patch implements the third option, though, because it has the least
potential for causing side-effects and we're close to the next release.
If one of the other options is implemented later as well to get their
additional benefits we can get rid of the extra copies introduced here.
Reported-by: Andrzej Hunt <andrzej@ahunt.org>
Signed-off-by: René Scharfe <l.s.r@web.de>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
92d8ed8ac1 (oidtree: a crit-bit tree for odb_loose_cache, 2021-07-07)
adds a struct oidtree_node that contains only an n field with a
struct cb_node.
unfortunately, while building in pedantic mode witch clang 12 (as well
as a similar error from gcc 11) it will show:
oidtree.c:11:17: error: 'n' may not be nested in a struct due to flexible array member [-Werror,-Wflexible-array-extensions]
struct cb_node n;
^
because of a constrain coded in ISO C 11 6.7.2.1¶3 that forbids using
structs that contain a flexible array as part of another struct.
use a strict cb_node directly instead.
Signed-off-by: Carlo Marcelo Arenas Belón <carenas@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
This saves 8K per `struct object_directory', meaning it saves
around 800MB in my case involving 100K alternates (half or more
of those alternates are unlikely to hold loose objects).
This is implemented in two parts: a generic, allocation-free
`cbtree' and the `oidtree' wrapper on top of it. The latter
provides allocation using alloc_state as a memory pool to
improve locality and reduce free(3) overhead.
Unlike oid-array, the crit-bit tree does not require sorting.
Performance is bound by the key length, for oidtree that is
fixed at sizeof(struct object_id). There's no need to have
256 oidtrees to mitigate the O(n log n) overhead like we did
with oid-array.
Being a prefix trie, it is natively suited for expanding short
object IDs via prefix-limited iteration in
`find_short_object_filename'.
On my busy workstation, p4205 performance seems to be roughly
unchanged (+/-8%). Startup with 100K total alternates with no
loose objects seems around 10-20% faster on a hot cache.
(800MB in memory savings means more memory for the kernel FS
cache).
The generic cbtree implementation does impose some extra
overhead for oidtree in that it uses memcmp(3) on
"struct object_id" so it wastes cycles comparing 12 extra bytes
on SHA-1 repositories. I've not yet explored reducing this
overhead, but I expect there are many places in our code base
where we'd want to investigate this.
More information on crit-bit trees: https://cr.yp.to/critbit.html
Signed-off-by: Eric Wong <e@80x24.org>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
