In the tmp-objdir api, tmp_objdir_create will create a temporary
directory but also register signal handlers responsible for removing
the directory's contents and the directory itself. However, the
function responsible for recursively removing the contents and
directory, remove_dir_recurse() calls opendir(3) and closedir(3).
This can be problematic because these functions allocate and free
memory, which are not async-signal-safe functions. This can lead to
deadlocks.
One place we call tmp_objdir_create() is in git-receive-pack, where
we create a temporary quarantine directory "incoming". Incoming
objects will be written to this directory before they get moved to
the object directory.
We have observed this code leading to a deadlock:
Thread 1 (Thread 0x7f621ba0b200 (LWP 326305)):
#0 __lll_lock_wait_private (futex=futex@entry=0x7f621bbf8b80
<main_arena>) at ./lowlevellock.c:35
#1 0x00007f621baa635b in __GI___libc_malloc
(bytes=bytes@entry=32816) at malloc.c:3064
#2 0x00007f621bae9f49 in __alloc_dir (statp=0x7fff2ea7ed60,
flags=0, close_fd=true, fd=5)
at ../sysdeps/posix/opendir.c:118
#3 opendir_tail (fd=5) at ../sysdeps/posix/opendir.c:69
#4 __opendir (name=<optimized out>)
at ../sysdeps/posix/opendir.c:92
#5 0x0000557c19c77de1 in remove_dir_recurse ()
git#6 0x0000557c19d81a4f in remove_tmp_objdir_on_signal ()
#7 <signal handler called>
git#8 _int_malloc (av=av@entry=0x7f621bbf8b80 <main_arena>,
bytes=bytes@entry=7160) at malloc.c:4116
git#9 0x00007f621baa62c9 in __GI___libc_malloc (bytes=7160)
at malloc.c:3066
git#10 0x00007f621bd1e987 in inflateInit2_ ()
from /opt/gitlab/embedded/lib/libz.so.1
git#11 0x0000557c19dbe5f4 in git_inflate_init ()
git#12 0x0000557c19cee02a in unpack_compressed_entry ()
git#13 0x0000557c19cf08cb in unpack_entry ()
git#14 0x0000557c19cf0f32 in packed_object_info ()
git#15 0x0000557c19cd68cd in do_oid_object_info_extended ()
git#16 0x0000557c19cd6e2b in read_object_file_extended ()
git#17 0x0000557c19cdec2f in parse_object ()
git#18 0x0000557c19c34977 in lookup_commit_reference_gently ()
git#19 0x0000557c19d69309 in mark_uninteresting ()
git#20 0x0000557c19d2d180 in do_for_each_repo_ref_iterator ()
git#21 0x0000557c19d21678 in for_each_ref ()
git#22 0x0000557c19d6a94f in assign_shallow_commits_to_refs ()
git#23 0x0000557c19bc02b2 in cmd_receive_pack ()
git#24 0x0000557c19b29fdd in handle_builtin ()
git#25 0x0000557c19b2a526 in cmd_main ()
git#26 0x0000557c19b28ea2 in main ()
Since we can't do the cleanup in a portable and signal-safe way, skip
the cleanup when we're handling a signal.
This means that when signal handling, the temporary directory may not
get cleaned up properly. This is mitigated by b3cecf49ea (tmp-objdir: new
API for creating temporary writable databases, 2021-12-06) which changed
the default name and allows gc to clean up these temporary directories.
In the event of a normal exit, we should still be cleaning up via the
atexit() handler.
Helped-by: Jeff King <peff@peff.net>
Signed-off-by: John Cai <johncai86@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The --remerge-diff option will need to create new blobs and trees
representing the "automatic merge" state. If one is traversing a
long project history, one can easily get hundreds of thousands of
loose objects generated during `log --remerge-diff`. However, none of
those loose objects are needed after we have completed our diff
operation; they can be summarily deleted.
Add a new helper function to tmp_objdir to discard all the contained
objects, and call it after each merge is handled.
Signed-off-by: Elijah Newren <newren@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The tmp_objdir API provides the ability to create temporary object
directories, but was designed with the goal of having subprocesses
access these object stores, followed by the main process migrating
objects from it to the main object store or just deleting it. The
subprocesses would view it as their primary datastore and write to it.
Here we add the tmp_objdir_replace_primary_odb function that replaces
the current process's writable "main" object directory with the
specified one. The previous main object directory is restored in either
tmp_objdir_migrate or tmp_objdir_destroy.
For the --remerge-diff usecase, add a new `will_destroy` flag in `struct
object_database` to mark ephemeral object databases that do not require
fsync durability.
Add 'git prune' support for removing temporary object databases, and
make sure that they have a name starting with tmp_ and containing an
operation-specific name.
Based-on-patch-by: Elijah Newren <newren@gmail.com>
Signed-off-by: Neeraj Singh <neerajsi@microsoft.com>
Reviewed-by: Elijah Newren <newren@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Specify the format of the on-disk reverse index 'pack-*.rev' file, as
well as prepare the code for the existence of such files.
The reverse index maps from pack relative positions (i.e., an index into
the array of object which is sorted by their offsets within the
packfile) to their position within the 'pack-*.idx' file. Today, this is
done by building up a list of (off_t, uint32_t) tuples for each object
(the off_t corresponding to that object's offset, and the uint32_t
corresponding to its position in the index). To convert between pack and
index position quickly, this array of tuples is radix sorted based on
its offset.
This has two major drawbacks:
First, the in-memory cost scales linearly with the number of objects in
a pack. Each 'struct revindex_entry' is sizeof(off_t) +
sizeof(uint32_t) + padding bytes for a total of 16.
To observe this, force Git to load the reverse index by, for e.g.,
running 'git cat-file --batch-check="%(objectsize:disk)"'. When asking
for a single object in a fresh clone of the kernel, Git needs to
allocate 120+ MB of memory in order to hold the reverse index in memory.
Second, the cost to sort also scales with the size of the pack.
Luckily, this is a linear function since 'load_pack_revindex()' uses a
radix sort, but this cost still must be paid once per pack per process.
As an example, it takes ~60x longer to print the _size_ of an object as
it does to print that entire object's _contents_:
Benchmark #1: git.compile cat-file --batch <obj
Time (mean ± σ): 3.4 ms ± 0.1 ms [User: 3.3 ms, System: 2.1 ms]
Range (min … max): 3.2 ms … 3.7 ms 726 runs
Benchmark #2: git.compile cat-file --batch-check="%(objectsize:disk)" <obj
Time (mean ± σ): 210.3 ms ± 8.9 ms [User: 188.2 ms, System: 23.2 ms]
Range (min … max): 193.7 ms … 224.4 ms 13 runs
Instead, avoid computing and sorting the revindex once per process by
writing it to a file when the pack itself is generated.
The format is relatively straightforward. It contains an array of
uint32_t's, the length of which is equal to the number of objects in the
pack. The ith entry in this table contains the index position of the
ith object in the pack, where "ith object in the pack" is determined by
pack offset.
One thing that the on-disk format does _not_ contain is the full (up to)
eight-byte offset corresponding to each object. This is something that
the in-memory revindex contains (it stores an off_t in 'struct
revindex_entry' along with the same uint32_t that the on-disk format
has). Omit it in the on-disk format, since knowing the index position
for some object is sufficient to get a constant-time lookup in the
pack-*.idx file to ask for an object's offset within the pack.
This trades off between the on-disk size of the 'pack-*.rev' file for
runtime to chase down the offset for some object. Even though the lookup
is constant time, the constant is heavier, since it can potentially
involve two pointer walks in v2 indexes (one to access the 4-byte offset
table, and potentially a second to access the double wide offset table).
Consider trying to map an object's pack offset to a relative position
within that pack. In a cold-cache scenario, more page faults occur while
switching between binary searching through the reverse index and
searching through the *.idx file for an object's offset. Sure enough,
with a cold cache (writing '3' into '/proc/sys/vm/drop_caches' after
'sync'ing), printing out the entire object's contents is still
marginally faster than printing its size:
Benchmark #1: git.compile cat-file --batch-check="%(objectsize:disk)" <obj >/dev/null
Time (mean ± σ): 22.6 ms ± 0.5 ms [User: 2.4 ms, System: 7.9 ms]
Range (min … max): 21.4 ms … 23.5 ms 41 runs
Benchmark #2: git.compile cat-file --batch <obj >/dev/null
Time (mean ± σ): 17.2 ms ± 0.7 ms [User: 2.8 ms, System: 5.5 ms]
Range (min … max): 15.6 ms … 18.2 ms 45 runs
(Numbers taken in the kernel after cheating and using the next patch to
generate a reverse index). There are a couple of approaches to improve
cold cache performance not pursued here:
- We could include the object offsets in the reverse index format.
Predictably, this does result in fewer page faults, but it triples
the size of the file, while simultaneously duplicating a ton of data
already available in the .idx file. (This was the original way I
implemented the format, and it did show
`--batch-check='%(objectsize:disk)'` winning out against `--batch`.)
On the other hand, this increase in size also results in a large
block-cache footprint, which could potentially hurt other workloads.
- We could store the mapping from pack to index position in more
cache-friendly way, like constructing a binary search tree from the
table and writing the values in breadth-first order. This would
result in much better locality, but the price you pay is trading
O(1) lookup in 'pack_pos_to_index()' for an O(log n) one (since you
can no longer directly index the table).
So, neither of these approaches are taken here. (Thankfully, the format
is versioned, so we are free to pursue these in the future.) But, cold
cache performance likely isn't interesting outside of one-off cases like
asking for the size of an object directly. In real-world usage, Git is
often performing many operations in the revindex (i.e., asking about
many objects rather than a single one).
The trade-off is worth it, since we will avoid the vast majority of the
cost of generating the revindex that the extra pointer chase will look
like noise in the following patch's benchmarks.
This patch describes the format and prepares callers (like in
pack-revindex.c) to be able to read *.rev files once they exist. An
implementation of the writer will appear in the next patch, and callers
will gradually begin to start using the writer in the patches that
follow after that.
Signed-off-by: Taylor Blau <me@ttaylorr.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The "argc" and "argv" names made sense when the struct was argv_array,
but now they're just confusing. Let's rename them to "nr" (which we use
for counts elsewhere) and "v" (which is rather terse, but reads well
when combined with typical variable names like "args.v").
Note that we have to update all of the callers immediately. Playing
tricks with the preprocessor is hard here, because we wouldn't want to
rewrite unrelated tokens.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
We eventually want to drop the argv_array name and just use strvec
consistently. There's no particular reason we have to do it all at once,
or care about interactions between converted and unconverted bits.
Because of our preprocessor compat layer, the names are interchangeable
to the compiler (so even a definition and declaration using different
names is OK).
This patch converts all of the remaining files, as the resulting diff is
reasonably sized.
The conversion was done purely mechanically with:
git ls-files '*.c' '*.h' |
xargs perl -i -pe '
s/ARGV_ARRAY/STRVEC/g;
s/argv_array/strvec/g;
'
We'll deal with any indentation/style fallouts separately.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
This requires updating #include lines across the code-base, but that's
all fairly mechanical, and was done with:
git ls-files '*.c' '*.h' |
xargs perl -i -pe 's/argv-array.h/strvec.h/'
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
In d8193743e0 (usage.c: add BUG() function, 2017-05-12), a new macro
was introduced to use for reporting bugs instead of die(). It was then
subsequently used to convert one single caller in 588a538ae5
(setup_git_env: convert die("BUG") to BUG(), 2017-05-12).
The cover letter of the patch series containing this patch
(cf 20170513032414.mfrwabt4hovujde2@sigill.intra.peff.net) is not
terribly clear why only one call site was converted, or what the plan
is for other, similar calls to die() to report bugs.
Let's just convert all remaining ones in one fell swoop.
This trick was performed by this invocation:
sed -i 's/die("BUG: /BUG("/g' $(git grep -l 'die("BUG' \*.c)
Signed-off-by: Johannes Schindelin <johannes.schindelin@gmx.de>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Migrate the struct alternate_object_database and all its related
functions to the object store as these functions are easier found in
that header. The migration is just a verbatim copy, no need to
include the object store header at any C file, because cache.h includes
repository.h which in turn includes the object-store.h
Signed-off-by: Stefan Beller <sbeller@google.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Signed-off-by: Nguyễn Thái Ngọc Duy <pclouds@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Commit 722ff7f87 (receive-pack: quarantine objects until
pre-receive accepts, 2016-10-03) regressed pushes to
repositories with colon (or semi-colon in Windows in them)
because it adds the repository's main object directory to
GIT_ALTERNATE_OBJECT_DIRECTORIES. The receiver interprets
the colon as a delimiter, not as part of the path, and
index-pack is unable to find objects which it needs to
resolve deltas.
The previous commit introduced a quoting mechanism for the
alternates list; let's use it here to cover this case. We'll
avoid quoting when we can, though. This alternate setup is
also used when calling hooks, so it's possible that the user
may call older git implementations which don't understand
the quoting mechanism. By quoting only when necessary, this
setup will continue to work unless the user _also_ has a
repository whose path contains the delimiter.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
This avoids "." and "..", as we already do, but also leaves
room for index-pack to store extra data in the quarantine
area (e.g., for passing back any analysis to be read by the
pre-receive hook).
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
The presence of the GIT_QUARANTINE_PATH variable lets any
called programs know that they're operating in a temporary
object directory (and where that directory is).
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
Once objects are added to the object database by a process,
they cannot easily be deleted, as we don't know what other
processes may have started referencing them. We have to
clean them up with git-gc, which will apply the usual
reachability and grace-period checks.
This patch provides an alternative: it helps callers create
a temporary directory inside the object directory, and a
temporary environment which can be passed to sub-programs to
ask them to write there (the original object directory
remains accessible as an alternate of the temporary one).
See tmp-objdir.h for details on the API.
Signed-off-by: Jeff King <peff@peff.net>
Signed-off-by: Junio C Hamano <gitster@pobox.com>
