diff --git a/drivers/pci/controller/pcie-apple.c b/drivers/pci/controller/pcie-apple.c
index c384777b0374..b090924b41fe 100644
--- a/drivers/pci/controller/pcie-apple.c
+++ b/drivers/pci/controller/pcie-apple.c
@@ -540,7 +540,7 @@ static int apple_pcie_setup_port(struct apple_pcie *pcie,
 	rmw_set(PORT_APPCLK_EN, port->base + PORT_APPCLK);
 
 	/* Assert PERST# before setting up the clock */
-	gpiod_set_value(reset, 0);
+	gpiod_set_value(reset, 1);
 
 	ret = apple_pcie_setup_refclk(pcie, port);
 	if (ret < 0)
@@ -551,7 +551,7 @@ static int apple_pcie_setup_port(struct apple_pcie *pcie,
 
 	/* Deassert PERST# */
 	rmw_set(PORT_PERST_OFF, port->base + PORT_PERST);
-	gpiod_set_value(reset, 1);
+	gpiod_set_value(reset, 0);
 
 	/* Wait for 100ms after PERST# deassertion (PCIe r5.0, 6.6.1) */
 	msleep(100);